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High throughput assay system for monitoring ESTs

Patent 6458533 Issued on October 1, 2002. Estimated Expiration Date: Icon_subject December 22, 2018. Estimated Expiration Date is calculated based on simple USPTO term provisions. It does not account for terminal disclaimers, term adjustments, failure to pay maintenance fees, or other factors which might affect the term of a patent.

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Inventors

Assignee

Application

No. 218089 filed on 12/22/1998

US Classes:

435/6, Involving nucleic acid435/91.1, Polynucleotide (e.g., nucleic acid, oligonucleotide, etc.)435/91.2, Acellular exponential or geometric amplification (e.g., PCR, etc.)536/23.2, Encodes an enzyme536/24.3Probes for detection of specific nucleotide sequences or primers for the synthesis of DNA or RNA

Examiners

Primary: Brusca, John S.
Assistant: Kim, Yong Ki

Attorney, Agent or Firm

Foreign Patent References

  • 19518217 DE. 11/04/1995
  • 0698792 EP. 02/04/1996
  • 0742286 EP. 11/04/1996
  • 0 742 286 EP. 11/04/1996
  • 0 846 776 EP. 06/04/1998
  • 89/11548 WO. 11/04/1989
  • WO 93 25563 WO. 12/04/1993
  • 97/05277 WO. 02/04/1997
  • 97/07245 WO. 02/04/1997
  • 97/27317 WO. 07/04/1997
  • 9727317 WO. 07/04/1997
  • 9731256 WO. 08/04/1997
  • WO 99 28494 WO. 06/04/1999

International Classes

C12Q 001/68
C12P 019/34
C07H 021/02
C07H 021/04

Abstract

The present invention relates to compositions, apparatus and methods useful for concurrently performing multiple, high throughput, biological or chemical assays, using repeated arrays of probes. A combination of the invention comprises a surface, which comprises a plurality of test regions, at least two of which, and in a preferred embodiment, at least twenty of which, are substantially identical, wherein each of the test regions comprises an array of generic anchor molecules. The anchors are associated with bifunctional linker molecules, each containing a portion which is specific for at least one of the anchors and a portion which is a probe specific for a target of interest. The resulting array of probes is used to analyze the presence or test the activity of one or more target molecules which specifically interact with the probes. In one embodiment of the invention, the test regions (which can be wells) are further subdivided into smaller subregions (indentations, or dimples).In one embodiment of the invention, ESTs are mapped. In another embodiment, the presence of a target nucleic acid is detected by protecting the target against nuclease digestion with a polynucleotide fragment, and analyzing the protected polynucleotide by mass spectrometry.

Other References

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