Diagnostic applications of perlecan domain I splice variants
Patent 6432636 Issued on August 13, 2002. Estimated Expiration Date: August 26, 2017. Estimated Expiration Date is calculated based on simple USPTO term provisions. It does not account for terminal disclaimers, term adjustments, failure to pay maintenance fees, or other factors which might affect the term of a patent.
An isolated polynucleotide that is a splice variant of perlecan formed by a partial or complete deletion of a number of exons within domain I of perlecan, the number of exons deleted from domain I numbering less than the number of exons in domain I. An isolated polynucleotide that is a splice variant of perlecan formed by an insertion of nucleotides within domain I of perlecan. A method of detection and/or quantitation of a splice variant of perlecan domain I gene in a sample, the method comprising making complimentary DNA (cDNA) from messenger RNA (mRNA) in the sample, amplifying portions of the cDNA corresponding to the perlecan gene or parts thereof and detecting and quantifying the amplified cDNA in order to detect or quantify the splice variant.
Other References
Ailles et al. "Induction of Perlecan Gene Expression Precedes Amyloid Formation during Experimental Murine AA Amyloidogenesis," Laboratory Investigation, vol. 69, No. 4, pp. 443-448, 1993
Cohen et al. "Structural Characterization of the Complete Human Perlecan Gene and Its Promoter," Proc. Natl. Acad. Sci. USA, vol. 90, pp. 10404-10408, 1993
Dolan et al. "Identification and Sites in Domain I of Perlecan That Regulate Heparan Sulfate Synthesis," Journal of Bio. Chem., vol. 272, No. 7, pp. 4316-4322, Feb. 14, 1997
Groffen et al. "Expression and Characterization of Human Perlecan Domains I and II Synthesized by Baculovirus-infected Insect Cells," European Journal of Biochem., vol. 241, pp. 827-834, 1996
Murdoch et al. "Widespread Expression of Perlecan Proteoglycan in Basement Membranes and Extracellular Matrices of Human Tissues as Detected by a Novel Monoclonal Antibody Against Domain III and In Situ Hybridization," The Journal of Histochem. and Cytochem., vol. 42, No. 2, pp. 239-249, 1994
Noonan et al. "Perlecan, the Large Low-density Proteoglycan of Basement Membranes: Structure and Variant Forms," Kidney International, vol. 43, pp. 53-60, 1993
Sigma Chemical Company "Biochemicals Organic Compounds for Research and Diagnostic Reagents," Sigma Chemical Company, 1992, pp. 513 (see products entitled heparan sulfate)
Stryer, Biochemsity, W.H. Freeman and Company, San Francisco, 1981, pp. 13-16 and 512-513
Goedert et al. "Assembly of Miocrotubule-associated Protein Tau into Alzheimer-like Filaments Induced by Sulphated Glycosaminoglycans," Nature, vol. 383, pp. 550-553, Oct. 1996
Maresh et al. "Detection and Quantitation of Perlecan mRNA Levels in Alzheimer's Disease and Normal Aged Hippocampus by Competitive Reverse Transcription-Polymerase Chain Reaction," J. Neurochem., vol. 67, No. 3, pp. 1132-1143, 1996
Murdoch et al. "Primary Structure of the Human Heparan Sulfate Proteoglycan from Basement Membrane (HSPG2/Perlecan)," Journal of Bio. Chem., vol. 267, No. 12, pp. 8544-8557, Apr. 25, 1992
Snow et al. "The Presence of Heparan Sulfate Proteoglycans in the Neuritic Plaques and Congophilic Angiopathy in Alzheimer's Disease," American Journal of Pathology, vol. 133, No. 3, pp. 456-463, Dec. 1988
Snow et al. "Immunolocalization of Heparan Sulfate Proteoglycans to the Prion Protein Amyloid Plaques of Gerstmann-Straussler Syndrome, Creutzfeldt-Jakob Disease and Scrapie," Laboratory Investigation, vol. 63, No. 5, pp. 601-611, 1990
Snow et al. "Proteoglycans in the Pathogenesis of Alzheimer's Disease and Other Amyloidoses," Neurobiology of Aging, vol. 10, pp. 481-497, 1989
Snow et al. "Heparan Sulfate Proteoglycans in Diffuse Plaques of Hippocampus but Not of Cerebellum in Alzheimer's Disease Brain," American Journal of Pathology, vol. 144, No. 2, pp. 337-347, Feb. 1994
Snow et al. "Differential Binding of Vascular Cell-Derived Proteoglycans (Perlecan, Biglycan, Decorin, and Versican) to the Beta-Amyloid Protein of Alzheimer's Disease," Archives of Biochemistry and Biophysics, vol. 320, No. 1, pp. 84-95 Jun. 20, 1995
Brunden et al. "pH-Dependent Binding of Synthetic ଲ-Amyloid Peptides to Glycosminoglycans," J. Neurochem., vol. 61, No. 6, pp. 2147-2154, 1993
Snow et al. "An Important Role of Heparan Sulfate Proteoglycan (Perlecan) in a Model System for teh Deposition and Persistence of Fibrillar Aଲ-Amyloid in Rat Brain," Neuron, vol. 12, pp. 219-234, Jan. 1994
Gupta-Bansal et al. "Proteoglycan-Mediated Inhibition of Aଲ Proteolysis," Journal of Bio. Chem., vol. 270, No. 31, pp. 18666-18671, 1995
Snow et al. "Early Accumulation of Heparan Sulfate in Neurons and in the Beta-Amyloid Protein-Containing Lesions of Alzheimer's Disease and Down's Syndrome," American Journal of Pathology, vol. 137, No. 5, pp. 1253-1270, Nov. 1990
Kallunki et al. "Human Basement Membrane Haparan Sulfate Proteoglycan Core Protein: A 467-kD Protein Containing Multiple Domains Resembling Elements of the Low Density Lipoprotein Receptor, Laminin, Neural Cell Adhesion Molecules, and Epidermal Growth Factor," Journal of Cell Biology, vol. 116, pp. 559-571, 1992
Noonan et al. "The Complete Sequence of Perlecan, a Basement Membrane Heparan Sulphate Proteoglycan, Reveals Extensive Similarity with Laminin A Chain, Low Density Lipoprotein-Receptor, and the Neural Cell Adhesion Molecule," Journal of Bio. Chem., vol. 266, No. 34, pp. 22939-22947, Dec. 5, 1991
Kato et al. "Basement Membrane Proteoglycan in Various Tissues: Characterization Using Monoclonal Antibodies to the Engelbreth-Holm-Swarm Mouse Tumor Low Density Heparan Sulfate Proteoglycan," Journal of Cell Biology, pp. 2203-2210, Jun. 1988
Kokenyesi et al. "Formation of Heparan Sulfate or Chondroitin/Dermatan Sulfate on Recombinant Domain I of Moise Perlecan Expressed in Chinese Hamster Ovary Cells," Biochemical and Biophysical Research Communications, vol. 211, No. 1, pp. 262-267, Jun. 6, 1995
Nochlin et al. "A Simple Method of Rapid Freezing Adequately Preserves Brain Tissue for Immunocytochemistry Light and Electron Microscopic Examination," Acta Neuropathol, vol. 86, pp. 645-650, 1993
Jacob et al. "The 5' Splice Site: Phylogenetic Evolution and Variable Geometry of Association with U1RNA," Nucleic Acids Research, vol. 17, No. 6, pp. 2159-2180, 1989
Jackson et al. "A Reappraisal of Non-Consensus mRNA Splice Sites," Nucleic Acids Research, vol. 19, No. 14, pp. 3795-3798, 1991
Fields et al. "Solid Phase Peptide Sythesis Utilizing 9-Fluorenylmethoxycarbonyl Amino Acids," Int. J.Peptide Protein Res., vol. 35, pp. 161-214, 1990
Hampson et al. "Separation of Radiolabelled Glycosaminoglycan Oligosaccharides by Polyacrylamide-Gel Electrophoresis," Biochem. J., vol. 221, pp. 697-705, 1984
Farach-Carson et al. "Extraction and Isolation of Glycoproteins and Proteoglycans," BioTechniques, vol. 7, No. 5, pp. 482-493, 1989
Hovingh et al. "Differentially Expressed Patterns of Glycosaminoglycan Structure in Heparan Sulfate Proteoglycans and Free Chains," Eur. J. Biochem., vol. 211, pp. 771-779, 199