Methods for sequencing repetitive sequences and for determining the order of sequence subfragments
Patent 6297006 Issued on October 2, 2001. Estimated Expiration Date: March 4, 2017. Estimated Expiration Date is calculated based on simple USPTO term provisions. It does not account for terminal disclaimers, term adjustments, failure to pay maintenance fees, or other factors which might affect the term of a patent.
435/6, Involving nucleic acid435/91.1, Polynucleotide (e.g., nucleic acid, oligonucleotide, etc.)435/91.5, Acellular preparation of polynucleotide435/91.52, Involving a ligase (6.)436/94, Saccharide (e.g., DNA, etc.)536/24.3Probes for detection of specific nucleotide sequences or primers for the synthesis of DNA or RNA
The present invention provides a method for detecting a target nucleic acid species including the steps of providing an array of probes affixed to a substrate and a plurality of labeled probes wherein each labeled probe is selected to have a first nucleic acid sequence which is complementary to a first portion of a target nucleic acid and wherein the nucleic acid sequence of at least one probe affixed to the substrate is complementary to a second portion of the nucleic acid sequence of the target, the second portion being adjacent to the first portion; applying a target nucleic acid to the array under suitable conditions for hybridization of probe sequences to complementary sequences; introducing a labeled probe to the array; hybridizing a probe affixed to the substrate to the target nucleic acid; hybridizing the labeled probe to the target nucleic acid; affixing the labeled probe to an adjacently hybridized probe in the array; and detecting the labeled probe affixed to the probe in the array.
Other References
Drmanac etal, Science (1993) 260.1649-1652.
Bainst, W., and Smith, G.C., (1988), "A Novel Method for Nucleic Acid Sequence Determination," Journal of Theoretical Biology, 135: 303-307
Beltz, G.A., Jacobs, K.A., Eickbush, T.H., Cherbas, P.T., and Kafatos, F.C., (1983), "Isolation of Multigene Families and Determination of Homologies by Filter Hybridization Methods," Methods in Enzymology, 100(19), 266-285
Conner, B.J., Reyes, A.A., Morin, C., Itakura, K., Teplitz, R.L., and Wallace, R.B., (1983), "Detection of Sickle Cell ଲ S -globin Allele by Hybridization with Synthetic Oligonucleotides," Proc. Natl. Acad. Sci. USA, 80, 278-282
Hobden, A.N., Read, M.J., Dykes, C.W., and Harford S., (1984), "M13 Clones Carrying Point Mutations: Identification by Solution Hybridization," Analytical Biochemistry, 144, 75-78
Matthews, J.A., Kricka, L.J., (1988) "Analytical Strategies for the Use of DNA Probes," Review Article, Analytical Biochemistry, 169, 1-25
Meinkoth, J., and Wahl, G., (1984) "Hybridization of Nucleic Acids Immobilized on Solid Supports," Review Article, Analytical Biochemistry, 138, 267-284
Poustka, A., Phol, T., Barlow, D.P., Zehetner, G., Craig, A., Michiels, F., Ehrich, E., Frischauf, A.M., and Lehrach, H., (1986), "Molecular Approaches to Mammalian Genetics," Cold Spring Harbor Symposia on Quantitative Biology, LI, 131-139
Syvanen, A.C., (1986), "Nucleic Acid Hybridization: From Research Tool to Routine Diagnostic Method," Review Article, Medical Biology, 64, 313-324
Drmanac, R., Labat, I., Brukner, I., and Crkvenjakov, R., (1989), "Sequencing a Megabase Plus DNA by Hybridization: Theory of the Method," Genomics, 4, 114-128
Gusev, V.D., Kulichkov, V.A., and Titkova, T.N., (1980), "Analysis of Genetic Texts. I. l-Gram Characteristics," Emperical Prediction and Recognition of Patterns, 83, 11-33
Saiki, R.K., Walsh, P.S., Levenson, C.H., Erlich, H.A., (1989), "Genetic Analysis of Amplified DNA with Immobilized Sequence-Specific Oligonucleotide Probes," Proc. Natl. Acad. Sci. USA, 86, 6230-6234
Drmanac, R., Labat, I., Strezoska, Z., Paunesku, T., Radosavljevic, D., Drmanac, S., and Crkvenjakov, R., (1990), "Sequencing by Oligonucleotide Hybridization: A Promising Framework in Decoding of the Genome Program?," Research Article, p.47-59
Besmer, P., Miller Jr. , R.C. , Caruthers, M.H., Kumar, A., Minamoto, K., Van De Sande, J.H., Sidarova, N., and Khorana, H.G., (1972), "Hybridization of Polydeoxynucleotides with Tyrosine Transfer RNA Sequences to the r-Strand of $c; 80 psu+III DNA," J. Mol. Biol., 72, 503-522
Breslauer, K.J., Frank, R., Blocker, H., and Marky, L.A., (1986), "Predicting DNA Duplex Stability from the Base Sequence," Proc. Natl. Acad. Sci., 83, 3746-3750
Craig, M.E., Crothers, D.M., and Doty, P., (1971), "Relaxation Kinetics of Dimer Formation by Self Complementary Oligonucleotides," J. Mol. Biol., 62, 383-401
Craig, A.G., Nizetic, D., Hoheisel, J.D., Zehetner, G., and Lehrach, H., (1990), "Ordering of Cosmid Clones Covering the Herpes Simplex Virus Type I (HSV-I) Genome: A Test Case for Fingerprinting by Hybridisation," Nucleic Acids Research, 18(9), 2653-2660
Drmanac, R., Lennon, G., Drmanac, S., Labat, I., Crkvenjakov, R., and Lehrach, H., (1990), "Partial Sequencing by Oligo-Hybridization: Concept and Applications in Genome Analysis, The First International Conference on Electrophoresis, Supercomputing and the Human Genome," pp. 66-70
Gillam, S., Waterman, K., and Smith, M., (1975), "The Base-Pairing Specificity of Cellulose-pdT9," Nucleic Acids Research, 2(5), 625-634
Ikuta, S., Takagi, K., Wallace, R.B., and Itakura, K., (1987), "Dissociation Kinetics of 19 Base Paired Oligonucleotide-DNA Duplexes Containing Different Single Mismatched Base Pairs," Nucleic Acids Research, 15(2) 797-811
Khrapko, K.R., Lysov, Y.P., Khorlyn, A.A., Shick, V.V., Florentiev, V.L., and Mirzabekov, A.D., (1989), "An Oligonucleotide Hybridization Approach to DNA Sequencing," Febs Letters, 256(1,2) 118-122
Kohara, Y., Akiyama, K., and Isono, K., (1987), "The Physical Map of the Whole E. coli Chromosome: Application of a New Strategy for Rapid Analysis and Sorting of a Large Genomic Library," 50, 495-508
Lewin, R., (1986), "Proposal to Sequence the Human Genome Stirs Debate," Research News, Molecular Biology of Homo Sapians, 232, 1598-1600
Craig, A., Michiels, F., Zehetner, G., Sproat, B., Burmeister, M., Bucan, M., Poustka, A., Pohl, T., Frischauf, A.M., Lehrach, H., (1987), "Molecular Techniques in Mammalian Genetics: A New Era in Genetic Analysis," Human Genetics, pp. 126-132
Wallace, R.B., Shaffer, J., Murphy, R.F., Bonner, J., Hirose, T., and Itakura, K., (1979), "Hybridization of Synthetic Oligodeoxyribonucleotides to $c; .chi. 174 DNA: The Effect of Single Base Pair Mismatch," Nucleic Acids Research, 6(11) 3543-3557
Wallace, R.B., Johnson, M.J., Hirose, T., Miyake, T., Kawashima, E.H., and Itakura, K., (1981), "The Use of Synthetic Oligonucleotides as Hybridization Probes, II. Hybridization of Oligonucleotides of Mixed Sequence to Rabbit ଲ -Globin DNA," Nucleic Acids Research, 9(4) 879-894
Wetmur, J.G., Davidson, N., (1968), "Kinetics of Renaturation of DNA," J. Mol. Biol., 31, 349-370
Wetmur, J.G., (1976), "Hybridization and Renaturation Kinetics of Nucleic Acids," Annual Review of Biophysics and Bioengineering, 5, 337-361
Wood, W.I., Gitschier, J., Lasky, L.A., and Lawn, R.M., (1985), "Base Composition-Independent Hybridization in Tetramethylammonium Chloride: A Method for Oligonucleotide Screening of Highly Complex Gene Libraries," Proc. Natl. Acad. Sci. USA, 82, 1585-1588
Angelini, G., De Preval, C., Gorski, J., and Mach, B., (1986), "High-Resolution Analysis of the Human HLA-DR Polymorphism by Hybridization with Sequence-Specific Oligonucleotide Probes," Proc. Natl. Acad. Sci. USA, 83, 4489-4493
Berdoz, J., Gorski, Jack, Termijtelen, A.M., Dayer, J.M., Irle, C., Schendel, D., Mach, B., (1987), "Constitutive and Induced Expression of the Individual HLA-DR ଲ and Chain Loci in Different Cell Types," The Journal of Immunology, 139(4), 1336-1341
Bugawan, T.L., Horn, G.T., Long, C.M., Mickelson, E., Hansen, J.A., Ferrara, G.B., Angeline, G., and Erlich, H.A., (1988), "Analysis of HLA-DP Allelic Sequence Polymorphism Using the in Vitro Enzymatic NDA Amplification of DP- and DP-ଲ Loci," Journal of Immunology, 141(12), 4024-4030
Church, G.M., and Gilbert, W., (1983), "Genomic Sequencing,", Proc. Natl. Acad. Sci., 81, 1991-1995
Crkvenjakov, R., Bucan, M., Konstantinovic, M., Fogel, M., Savic, A., and Glisin, V., (1984), "Characterization of Two Rat Globin cDNA Clones," Hemoglobin, 8(6), 597-611
Crkvenjakov, R., Drmanac, R., Bucan, M., Konstantinovic, M., Fogel, M., Maksimovic, V., Petrovic, N., Savic, A., and Glisin, V., (1984), "Cloning of Eucaryotic Gene Sequences: Studies on Human Fibroblast Interferon and Rat Globin Genes," Periodicum Biologorum, 86(2) 115-124
Gorski, J., Tilanus, M., Giphart, M., and Mach, B., (1987), "Oligonucleotide Genotyping Shows that Alleles at the HLA-DR III Locus of the DRw52 Supertypic Group Segregate Independently of Known DR or Dw Specificities," Immunogenetics, 25, 79-83
Irle, C., Jaques, D., Tiercy, J.M., Fuggle, S.V., Gorski, J., Termijtelen, A., Jeannet, M., and Mach, B., (1988), "Functional Polymorphism of Each of the Two HLA-DR ଲ Chain Loci Demonstrated with Antigen-Specific DR3- and DRw52-Restricted T Cell Clones," J. Exp. Med., 167, 853-872
Landry M.D., M.L., Fong, Ph.D., C.K.Y., (1985), "Nucleic Acid Hybridization in the Diagnosis of Viral Infections," Clinics in Laboratory Medicine, 5(3), 513-529
Lehrach, H., Zehetner, G., Nicetic, D., Craig, A., Michiels, F., (1988), "Oligonucleotide Fingerprinting, A Parallell Approach to Establish Ordered Clone Libraries," Abstracts and Papers presented at the 1988 meeting on Genome Mapping and Sequencing, p.11
Lehrach, H., Drmanac, R., Hoheisel, J., Larin, Z., Lennon, G., Monaco, A.P., Nizetic, D., Zehetner, G., and Poustka, A., (1990), "Hybridization Fingerprinting in Genome Mapping and Sequencing," Genome Analysis, 1, 39-71
Michiels, F., Craig, A.G., Zehetner, G., Smith, G.P., and Lehrach, H., (1987), "Molecular Approaches to Genome Analysis: A Strategy for the Construction of Ordered Overlapping Clone Libraries," Cabios: Molecular Analysis of Genetic Distances, 3(3), 203-210
Pevzner, P.A., (1989), "1-Tuple DNA Sequencing: Computer Analysis," Journal of Biomolecular Structure & Dynamics, 7(1), 63-73
Rappold, G.A., Stubbs, L., Labeit, S., Crkvenjakov, R.B., and Lehrach, H., (1987), "Identification of a Testis-Specific Gene from the Mouse T-Complex Next to a CpG-rich Island," The EMBO Journal, 6(7), 1975-1980
Saiki, R.K., Scharf, S., Faloona, F., Mullis, K.B., Horn, G.T., Erlich, H.A., Arnheim, N., (1985), "Enzymatic Amplification of ଲ -Globin Genomic Sequences and Restriction Site Analysis for Diagnosis of Sickle Cell Anemia," Science: Research Article, 230, 1350-1354
Saiki, R.K., Bugawan, T.L., Horn, G.T., Mullis, K.B., and Erlich, H.A., (1986), "Analysis of Enzymatically Amplified ଲ -Globin and HLA-DQ DNA with Allele-Specific Oligonucleotide Probes," Letters to Nature, 324, 163-166
Saiki, R.K., Walsh, P.S., Levenson, C.H., and Erlich, H.A., (1989), "Genetic Analysis of Amplified DNA with Immobilized Sequence-Specific Oligonucleotide Probes," Proc. Natl. Acad. Sci. USA, 86, 6230-6234
Scharf, S.J., Friedmann, A., Brautbar, C., Szafer, F., Steinman, L., Horn, G., Gyllensten, U., and Erlich, H.A., (1988), "HLA Class II Allelic Variation and Susceptibility to Pemphigus Vulgaris," Proceedings of Natl. Academy of Science, 85, 3504-3508
Staden, R., (1980), "A New Computer Method for the Storage and Manipulation of DNA Gel Reading Data," Nucleic Acid Research, 8, 3673-3695
Stevanovic, M., Paunesku, T., Radosavljevic, D., Drmanac, R., and Crkvenjakov, R., (1989), "Variant Chromosomal Arrangement of Adult ଲ -Globin Genes in Rat," Genetics, 79, 139-150
Sterc, J., and Novakova, V., (1988), "Role of the Limbic System in the Regulation of the Maternal Behavior in Laboratory Rats," Journal of Experimental Animal Science: XXIVth International Symposium, p. 192
Termijtelen, A., Gorski, J., Robbins, F.M., Tanigaki, N., Tosi, R., Tilanus, M.G.J., Schroeijers, W.E.M., and Van Rood, J.J., (1988), "Correlations Between Polymorphisms at the DNA and at the Protein Level of Drw52 Haplotypes, Revealed with a Variety of Techniques," Human Immunology, 22, 171-178
Thein, S.L., and Wallace, R.B., (1986), "The Use of Synthetic Oligonucleotides as Specific Hybridization Probes in the Diagnosis of Genetic Disorders," Human Genetic Diseases: A Practical Approach, Ch. 3, 33-50
Tiercy, J.M., Gorski, J., Jeannet, M., and Mach, B., (1988), "Identification and Distribution of Three Serologically Undetected Alleles of HLA-DR by Oligonucleotide DNA Typing Analysis," Proc. Natl. Acad. Sci. USA, 85, 198-202
Ucla, C., Van Rood, J.J., Gorski, J., and Mach, B., (1987), "Analysis of HLA-D Micropolymorphism by a Simple Procedure: RNA Oligonucleotide Hybridization," J. Clin. Invest., 80, 1155-1159
Wu, D.Y., Nozari, G., Schold, M., Conner, B.J., and Wallace R.B., (1989), "Direct Analysis of Single Nucleotide Variation in Human DNA and RNA Using In Situ Dot Hybridization," Laboratory Methods: DNA, 8(2) 135-142
Schildkraut, C.L., Marmur, J., and Doty, P., (1961), "The Formation of Hybrid DNA Moleculres and Their Use in Studies of DNA Homologies," J. Mol. Biol., 8, 595-617
Suggs, S.V., Wallace, R.B., Hirose, T., Kawashima, E.H., and Itakura, K., (1981), "Use of Synthetic Oligonucleotides as Hybridization Probes: Isolation of Cloned cDNA Sequences for Human ଲ2 -Microglobulin," Proc. Natl. Acad. Sci. USA, 78(11) 6613-6617
Evans, G.A., and Lewis, K.A., (1989), "Physical Mapping of Complex Genomes by Cosmid Multiplex Analysis," Proc. Natl. Acad. Sci. USA, 86, 5030-5034
Sim, G.K., Kafatos, F.C., Jones, C.W., and Koehler, M.D., (1979), "Use of a cDNA Library for Studies on Evolution and Developmental Expression of the Chorion Multigene Families," Cell, pp. 1303-1316
Stein, S.K.,(1961), "The Mathematician as an Explorer," Scientific American, 204, 149-158
Labat, I., (1988), "Subfragments as an Informative Characteristic of the DNA Molecule-Computer Simulation," Research Report, pp. 1-33
(1988), "Sequencing of Megabase Plus DNA by Hybridization: Theory of the Method," A poster presented at the 1988 Meeting on Genome Mapping and Sequencing, pp.III-IV
Masiakowski et al., (1982), Cloning of cDNA Sequences of Hormone-Regulated Genes from the MCF-7 Human Breast Cancer, Nucleic Acids Research, 10(24), 7895-7903
Lysov, et al., (1988), Determination of the DNA Nucleotide Sequence by the Hybridization with Oligonucleotides, A new method (in Russian), Doklady Akademii Nauk SSSR, 303(5), 1508-1511
(1996) Nature Genetics, 14(4), 367-370
Bains, W., and Smith, G. C. (1988). "A Novel Method for Nucleic Acid Sequence Determination." J Theor Biol, 135, 303-7
Besmer, P., Miller, R.J., Caruthers, M. H., Kumar, A., Minamoto, K., Van de Sande, J. H., Sidarova, N., and Khorana, H. G. (1972). "Studies on Polynucleotides. CXVII. Hybridization of Polydeoxynucleotides with Tyrosine Transfer RNA Sequences to the r- Strand of $c; 80psu + III DNA." J Mol Biol, 72, 503-22
Blanchard, A. P., Kaiser, R. J., and Hood, L. E. (1996). "High Density Oligonucleotide Arrays." Biosensors and Bioelectronics, 11(6/7), 687-690
Blanchard, A. P., and Hood, L. (1996). "Sequence to Array: Probing the Genome's Secrets." Nature Biotechnology, 14, 1649
Broude, N.E., Sano, T., Smith, C. L., and Cantor, C. R. (1994). "Enhanced DNA Sequencing by Hybridization." Proc Natl Acad Sci U S A, 91, 3072-6
Cantor, C. R., Mirzabekov, A., and Southern, E. (1992). "Report on the Sequencing by Hybridization Workshop." Genomics, 13, 1378-83
Chee, M., Yang, R., Hubbell, E., Berno, A., Huang, X. C., Stern, D., Winkler, J., Lockhart, D. J., Morris, M. S., and Fodor, S. P. (1996). "Accessing Genetic Information with High-Density DNA Arrays." Science, 274, 610-4
Craig, A. G., Nizetic, D., Hoheisel, J. D., Zehetner, G., and Lehrach, H. (1990). "Ordering of Cosmid Clones Covering the Herpes Simplex Virus Type I (HSV-I) Genome: a Test Case for Fingerprinting by Hybridisation." Nucleic Acids Res, 18(9), 2653-60
Drmanac, R., Labat, I., Brukner, I., and Crkvenjakov, R. (1989). "Sequencing of Megabase Plus DNA by Hybridization: Theory of the Method." Genomics, 4, 114-28
Drmanac, R., Labat, I., Strezoska, Z., and Crkvenjakov, R. (1989). "An Alternative Large DNA Sequencing Method: The Theoretical and Informational Feasability of Sequencing by Hybridization." Abstracts of papers presented at the 1989 meeting on Genome Mapping and Sequencing: Apr. 26-Apr. 30, 1989, C. Cantor, M. Olson, and R. Roberts, eds., Cold Spring Harbor Laboratory, Cold Spring Harbor, 44
Drmanac, R., Strezoska, Z., Labat, I., Drmanac, S., and Crkvenjakov, R. (1990). "Reliable Hybridization of Oligonucleotides as Short as Six Nucleotides." DNA Cell Biol, 9(7), 527-34
Drmanac, R., and Crkvenjakov, R. (1990). "Prospects for a Miniaturized, Simplified, and Frugal Genome Project." Scientia Yugoslavica, 16(1-2), 97-107
Drmanac, R., Lennon, G., Drmanac, S., Labat, I., Crkvenjakov, R., and Lehrach, H. (1990). "Partial Sequencing by Oligo-Hybridization: Concept and Applications in Genome Analysis," The First International Conference on Electrophoresis, Supercomputing and the Human Genome, C. Cantor and H . Lim, eds., World Scientific, Singapore, 60-74
Drmanac, R., Labat, I., and Crkvenjakov, R. (1991). "An Algorithm for the DNA Sequence Generation from k-Tuple Word Contents of the Minimal Number of Random Fragments." J Biomol Struct Dyn, 8(5), 1085-102
Drmanac, R., Labat, I., Strezoska, Z., Paunesku, T., Radosavljevik, D., Drmanac, S., and Crkvenjakov, R. (1991). "Sequencing by Oligonucleotide Hybridization: A Promising Framework in Decoding of the Human Genome Program?" The First International Conference on Electrophoresis, Supercomputing and the Human Genome, Apr. 10-13, 1990, C. R. Cantor and H. A. Lim, eds., World Scientific, Singapore, 47-59
Drmanac, R., Nizetic, D., Lennon, G. G., Beitverda, A., and Lehrach, H. (1991). "W (A or T) Sequences as Probes and Primers Suitable for Genomic Mapping and Fingerprinting." Nucleic Acids Res, 19(21), 5839-42
Drmanac, R., Drmanac, S., Labat, I., Crkvenjakov, R., Vicentic, A., and Gemmell, A. (1992). "Sequencing by Hybridization: Towards an Automated Sequencing of One Million M13 Clones Arrayed on Membranes." Electrophoresis, 13, 566-73
Drmanac, R., and Crkvenjakov, R. (1992). "Sequencing by Hybridization (SBH) with Oligonucleotide Probes as an Integral Approach for the Analysis of Complex Genomes." International Journal of Genome Research, 1(1), 59-79
Drmanac, R. (1992). "How 1000 Base Pairs with 10% Error become 10,000 Base Pairs of Correct Sequence: A Felicitious Marriage of the Gel and Hybridization Sequencing Methods." Abstracts of papers presented at the 1992 meeting on Genome Mapping and Sequencing: May 6- May 10, 1992, R. Myers, D. Porteous, and R. Roberts, eds., Cold Spring harbor Laboratory, Cold Spring Harbor, 318
Drmanac, R., Drmanac, S., Strezoska, Z., Paunesku, T., Labat, I., Zeremski, M., Snoddy, J., Funkhouser, W. K., Koop, B., Hood, L., and et al. (1993). "DNA Sequence Determination by Hybridization: A Strategy for Efficient Large-Scale Sequencing," [published erratum appears in Science Feb. 4, 1994;163(5147):596]. Science, 260, 1649-52
Drmanac, R., Drmanac, S., Labat, I., Vicentic, A., Gemmell, A., Stavropoulos, N., and Jarvis, J. (1993). "SBH and the Integration of Complementary Approaches in the Mapping, Sequencing, and Understanding of Complex Genomes." The Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis: proceedings of the June 4-7, 1992 Conference at St. Petersbug Beach, Florida, USA, H. A. Lim, J. W. Fickett, C. R. Cantor, and R. J. Robbins, eds., World Scientific, Singapore, 121-134
Drmanac, S., and Drmanac, R. (1994). "Processing of cDNA and Genomic Kilobase-Size Clones for Massive Screening, Mapping and Sequencing by Hybridization." Biotechniques, 17(2), 328-9, 332-6
Drmanac, R., Drmanac, S., Labat, I., and Stavropoulos, N. (1994). "Requirements in Screening cDNA Libraries for New Genes and Solutions Offered by SBH Technology," Identification of Transcribed Sequences, U. Hochgeschwender and K. Gardiner, eds., Plenum Press, New York, 239-251
Drmanac, R., Drmanac, S., Jarvis, J., and Labat, I. (1994). "Sequencing by Hybridization." Automated DNA Sequencing and Analysis, M. D. Adams, C. Fields, and J. C. Venter, eds., Academic Press, Harcourt Brace & Company, London, 4, 29-36
Dyer, M., Frieze, A., and Suen, S. (1994). "The probability of Unique Solutions of Sequencing by Hybridization." J Comput Biol, 1(2), 105-10
Gillam, S., Waterman, K., and Smith, M. (1975). "The Base-Pairing Specificity of Cellulose-pdT9." Nucleic Acids Res, 2(5), 625-34
Gingeras, T. R., Kwoh, D. Y., and Davis, G. R. (1987). "Hybridization Properties of Immobilized Nucleic Acids." Nucleic Acids Res, 15(13), 5373-90
Hacia, J. G., Brody, L. C., Chee, M. S., Fodor, S. P., and Collins, F. S. (1996). "Detection of Heterozygous Mutations in BRCA1 Using High Density Oligonucleotide Arrays and Two-Colour Fluorescence Analysis [see comments]." Nat Genet, 14, 441-7
Khrapko, K. R., Lysov Yu, P., Khorlyn, A. A., Shick, V. V., Florentiev, V. L., and Mirzabekov, A. D. (1989). "An Oligonucleotide Hybridization Approach to DNA Sequencing." FEBS Lett, 256(1-2), 118-22
Kozal, M. J., Shah, N., Shen, N., Yang, R., Fucini, R., Merigan, T. C., Richman, D. D., Morris, D., Hubbell, E., Chee, M., and Gineras, T. R. (1996). "Extensive Polymorphisms Ovserved in HIV-1 Clade B Protease Gene Using High-Density Oligonucleotide Arrays." Nat Med, 2(7), 753-9
Kreiner, T. (1996). "Rapid Genetic Sequence Analysis Using a DNA Probe Array System." American Laboratory, Mar., 39-43
Labat, I., and Drmanac, R. (1993). "Simulations of Ordering and Sequence Reconstruction of Random DNA Clones Hybridized with a Small Number of Oligomeric Probes." The Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis: proceedings of the Jun. 4-7, 1992 Conference at St. Petersburg Beach, Florida, USA, H. A. Lim, J. W. Fickett, C. R. Cantor, and R. J. Robbins, eds., World Scientific, Singapore, 555-565
Latham, T., and Smith, F. I. (1989). "Detection of Single-Base Mutations in DNA Molecules Using the Solution Melting Method." DNA, 8(3), 223-31
Lehrach, H., Drmanac, R., Hoheisel, J., Larin, Z., Lennon, G., Nizetic, D., Monaco, T., Zehetner, G., and Poustka, A. "Hybridization Fingerprinting in Genome Mapping and Sequencing." Genome Analysis I, Genetic and Physical Mapping, Cold Spring Harbor, 1, 39-81
Lipshutz, R. J. (1993). "Likelihood DNA Sequencing by Hybridization." J Biomol Struct Dyn, 11(3), 637-53
Lipshutz, R. J., Morris, D., Chee, M., Hubbell, E., Kozal, M. J., Shah, N., Shen, N., Yang, R., and Fodor, S. P. (1995). "Using Oligonucleotide Probe Arrays to Access Genetic Diversity." Biotechniques, 19(3), 442-7
Lockhart, D. J., Dong, H., Byrne, M. C., Follettie, M. T., Gallo, M. V., Chee, M. S., Mittman, M., Wang, C., Kobayashi, M., Horton, H., and Brown, E. L. (1996). "Expression Monitoring by Hybridization to High-Density Oligonucleotide Arrays." Nature Biotechnology, 14, 1675-80
Lysov Iu, P., Florent'ev, V. L., Khorlin, A. A., Khrapko, K. R., and Shik, V. V. (1988). "Determination of the Nucleotide Sequence of DNA Using Hybridization with Oligonucleotides. A new method." Dokl Adac Nauk SSSR, 303(6), 1508-11
Mirzabekov, A. D. (1994). "DNA Sequencing by Hybridization--a Megasequencing Method and a Diagnostic Tool?" Trends Biotechnol, 12, 27-32
Paunesku, T., Gemmell, M. A., Crkvenjakov, R., and Woloschak, G. E. (1994). "A Presumed B6 Strain-Specific p53 Polymorphism is Confined to a B6 Cell Line and is Likely to Represent a Facilitating Mutation." Mamm Genome, 5, 106-7
Pevzner, P. A., Lysov Yu, P., Khrapko, K. R., Belyavsky, A. V., Florentiev, V. L., and Mirzabekov, A. D. (1991). "Improved Chips for Sequencing by Hybridization." J Biomol Struct Dyn, 9(2), 399-410
Shoemaker, D. D., Lashkari, D. A., Morris, D., Mittmann, M., and Davis, R. W. (1996). "Quantitative Phenotypic Analysis of Yeast Deletion Mutants Using a Highly Parallel Molecular Bar-Coding Strategy [see comments]." Nat Genet, 14, 450-6
Strezoska, A., Paunesku, T., Radosavljevic, D., Labat, I., Drmanac, R., and Crkvenjakov, R. (1991). "DNA Sequencing by Hybridization: 100 Bases Read by a Non-Gel-Based Method." Proc Natl Acad Sci U S A, 88, 10089-9