U.S. patents available from 1976 to present.
U.S. patent applications available from 2005 to present.

Nucleic acid amplification with DNA-dependent RNA polymerase activity of RNA replicases

Patent 6090589 Issued on July 18, 2000. Estimated Expiration Date: Icon_subject July 18, 2017. Estimated Expiration Date is calculated based on simple USPTO term provisions. It does not account for terminal disclaimers, term adjustments, failure to pay maintenance fees, or other factors which might affect the term of a patent.

Patent References

Autocatalytic replication of recombinant RNA
Patent #: 4786600
Issued on: 11/22/1988
Inventor: Kramer ,   et al.

4957858

Target-dependent synthesis of an artificial gene for the synthesis of a replicatable RNA
Patent #: 5112734
Issued on: 05/12/1992
Inventor: Kramer, et al.

Nucleic acid sequence amplification methods Patent #: 5480784
Issued on: 01/02/1996
Inventor: Kacian, et al.

Inventors

Assignee

Application

No. 480041 filed on 06/06/1995

US Classes:

435/91.1, Polynucleotide (e.g., nucleic acid, oligonucleotide, etc.)435/6, Involving nucleic acid435/91.21, Involving the making of multiple RNA copies536/22.1, N-glycosides, polymers thereof, metal derivatives (e.g., nucleic acids, oligonucleotides, etc.)536/24.3, Probes for detection of specific nucleotide sequences or primers for the synthesis of DNA or RNA536/24.33, Primers536/25.4Separation or purification of polynucleotides or oligonucleotides

Examiners

Primary: Marschel, Ardin H.
Assistant: Riley, Jezia

Attorney, Agent or Firm

Foreign Patent References

  • WO 88/10315 EP 12/13/1988
  • WO 88/10315 WO 12/13/1988
  • WO 89/10413 WO 11/13/1989
  • WO 90/02819 WO 03/13/1990
  • WO 90/06995 WO 06/13/1990
  • WO 90/14439 WO 11/13/1990

International Classes

C12Q 001/68
C12P 019/34
C07H 019/00
C07H 021/04

Abstract

The present invention entails methods, and kits for carrying them out, based on the discovery that an RNA replicase, such as Qଲ replicase, has DNA-dependent RNA polymerase ("DDRP") activity with nucleic acid segments, including DNA segments and DNA:RNA chimeric segments, which comprise a 2'-deoxyribonucleotide or an analog thereof and which have sequences of RNAs that are autocatalytically replicatable by the replicase. The discovery of this DDRP activity provides methods of the invention for nucleic acid amplification wherein a nucleic acid, with a DNA segment with the sequence of an RNA that is autocatalytically replicatable by an RNA replicase, is provided as a substrate for the replicase. Assays of the invention include those wherein a nucleic acid analyte is hybridized with one or more nucleic acid probes, which include or are processed to generate a DNA segment which is amplifiable through production from the segment, catalyzed by the DDRP activity of an RNA replicase, of an autocatalytically replicatable RNA, which is autocatalytically replicated to provide an abundance of readily detectable reporter molecules.

Other References

  • Gulati, S.C., et al., "Conditions for Using DNA Polymerase I as an RNA-Dependant DNA Polymerase", Proc. Nat. Acad. Sci, vol. 71, No. 4, pp. 1035-1039 (1974)
  • Feix, G. and Sano, H. "Polydeoxribonucleotides as Templates for RNA Synthesis Catalysed by Qଲ Replicase" FEBS Letters (1976) 63(1):201-204
  • Vournakis, J.N., Carmichael, G.C., and Efstratiadis, A. (1976) Synthesis of RNA Complementary to Rabitt Globin mRNA by Qଲ Replicase, "Biochem. and Biophys. Res. Comm." 70:774-782
  • Blumenthal, T. and Carmichael, GG. "RNA Replication: Function and Structure of Qଲ-replicase," Ann. Rev. Biochem. (1979) 48:525-548
  • Miele, et al., "Autocatalitic replication of recombinant RNA", Journal of Molecular Biology, vol. 171, pp. 281-295 (1983)
  • Chu et al., "Synthesis of an amplifiable reporter RNA for bioassays", Nucleic Acids Research, vol. 14, No. 14, pp. 5598-5602 (1986)
  • Sharmeen, Lamia and Tayler, John, "Enzymatic synthesis of RNA oligonucleotides", Nucleic Acids Research, vol. 15, No. 16, pp. 6705-6711 (1987)
  • Milligan, John F., et al., "Oligonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates", Nucleic Acids Research, vol. 15, No. 21, pp. 8783-8799 (1987)
  • Tabor, Stanley and Richardson, Charles C., "Effect of Manganese ion on the incorporation of dideoxynucleotides by bacteriophage T7 DNA polymerase and E. coli DNA polymerase I", Proc. Natl. Acad. Sci., vol. 86, pp. 4076-4080 (1989
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