Method and system for multiple wavelength microscopy image analysis
Patent 5732150 Issued on March 24, 1998. Estimated Expiration Date: September 19, 2015. Estimated Expiration Date is calculated based on simple USPTO term provisions. It does not account for terminal disclaimers, term adjustments, failure to pay maintenance fees, or other factors which might affect the term of a patent.
A method and system for segmenting images of samples stained with two, three, or more stains accurately and reliably into multiple single-color images which represent the mass density of the stain at each position in the sample. The system includes a computer-controlled microscope and CCD camera, and at least one computer which includes data storage media for storing image data and which runs software for controlling image acquisition and analysis. To analyze tissue stained with N stains, images must be obtained at N different wavelengths, from multiply stained and singly stained samples. Relative stain mass densities are calculated with the use of the ratio of absorptivities measured at different wavelengths. The theoretical and practical basis for implementing the method with two, three, or more stains is presented. A method for selecting the wavelengths which provide optimal image accuracy and resolution is also provided.
Other References
Bacus, S., J.L. Flowers, M.F. Press, J.W. Bacus and K.S. McCarty, "The Evaluation of Estrogen Receptor in Primary Breast Carcinoma by Computer-Assisted Image Analysis," A.J.C.P., vol. 90, No. 3, pp. 233-239, 1988
Brugal, G., "Colour Processing in Automated Image Analysis for Cytology," in Quantitative Image Analysis in Cancer Cytology and Histology, J.Mary and J. Rigaut, Eds., Elsevier Science Publishers, B.V., 1986
Brugal, G. C. Garbay, F. Giroud and D. Adelh, "A Double Scanning Microphotomer for Image Analysis: Hardware, Software and Biomedical Applications" J. Histochem. and Cytochem., vol. 27, No. 1, pp. 144-152, 1979
Charpin, C., J. Jacquemier, L. Andrac, H. Vacheret, M.C. Habib, B. Devictor, M.N. Lavaut and M. Toga, "Multiparametric Analysis (SAMBA 200) of the Progesterone Receptor Immunocytochemical Assay in Nonmalignant and Malignant Breast Disorders," Am. J. Pathol., vol. 132, No. 2, pp. 199-211, 1988
Charpin, C., L. Andrac, M.C. Habib, H. Vacheret, L. Xerpi, B. Devictor, M.N. Lavaut and M. Toga, "Immunodetection in Fine-Needle Aspirates and Multiparameteric (SAMBA) Image Analysis, " Cancer, vol. 63, pp. 863-872, 1989
Charpin, C., P.M. Martin, B. Devictor, M.N. Lavaut, M.C. Habib, L. Andrac and M. Toga, "Multiparametric Study (SAMBA 200) of Estrogen Receptor Immunocytochemical Assay in 400 Human Breast Carcinomas: Analysis of Estrogen Receptor Distribution Heterogeneity in Tissues and Correlations with Dextran Coated Charcoal Assays and Morphological Data," Cancer Res., vol. 48, pp. 1578-1586, 1988
Charpin, C., P.M. Martin, J. Jacquemier, M.N. Lavaut, N. Pourreau-Schnieder and M. Toga, "Estrogen Receptor Immunocytochemical Assay (ER-ICA): Computerized Image Analysis System, Immunoelectron Microscopy, and Comparisons with Estradial Binding Assays in 115 Breast Carcinomas," Cancer Res. (SUPPL)., vol. 46, pp. 4271s-4277s, 1986
Chassery, J.M. and C. Garbay, "An Iterative Segmentation Method Based on a Contextural Color and Shape Criterion," IEEE Trans. Pattern Analysis and Machine Intelligence, vol. PAMI-6, No. 6, pp. 794-800, 1984
Esteban, J.M., H. Battifora, Z. Warsi, A. Bailey and S. Bacus, "Quantification of Estrogen Receptors on Parraffin-Embedded Tumors by Image Analysis," Modern Pathol., vol. 4, pp. 53-57, 1991
Figge, J., G. Bakst, D. Weisheit, O. Solis and J.S. Ross, "Image Analysis Quantitation of Immunoreactive Retinoblastoma Protein in Human Thyroid Neoplasms with a Streptavidin-biotin-peroxidase Staining Techniques," Am. J. Pathol., vol. 139, No. 6, pp. 1213-1219, 1991
Garcia, J.A., J. Romero, L. Jimenez del Barco and E. Hita, "Improved Formula for Evaluating Colr-Differential Thresholds," Appl. Opt., vol. 31, No. 29, pp. 6292-6298, 1992
Gauvain, C. D. Seigneurin and G. Brugal, "A Quantitative Analysis of the Human Bone Marrow Erythroblastic Cell Lineage Using the SAMBA 200 Cell Image Processor, I. The Normal Maturation Sequence," Analyt. Quant. Cytol. Histol., vol. 9, pp. 253-262, 1987
Gillette, P.C., J.B. Lando and J.L. Koenig, "Computer-assisted Spectral Identification of Unknown Mixtures," Appl. Spectr., vol. 36, pp. 661-665, 1982
Kasdan, H.L., K.C. Langford, J. Liberty, M. Zachariash and F. J. Deindoerfer, "High Performance Pathology Workstation using an Automated Multispectal Microscope," Applied Optics, vol. 26, No. 16, pp. 3294-3300, 1987
Kawata, S. H. Komeda, K. Sasaki and S. Minami, "Advanced Algorithm for Determining Component Spectra Based on Principal Component Analysis," Appl. Spectr., vol. 39, pp. 610-614, 1985
Kawata, S., K. Sasaki and S. Minami, "Component Analysis of Spatial and Spectral Patterns in Multispectral Images. I. Basis". J. Opt. Soc. Am. A., vol. 4, No. 11, pp. 2101-2106, 1987
MacAulay, C, H. Tezcan and B. Palcic, "Adaptive Color Basis Transformation," Analyt, Quant. Cytol. Histol., vol. 11, No. 1, pp. 53-58, 1989
McClelland, R.A., P. Finlay, K.J. Walker, D. Nicholson, J.F.R. Robertson, R.W. Blamey and R.I. Nicholson, "Automated Quantitation of Immunocytochemically Localized Estrogen Receptors in Human Breast Cancer," Cancer Res. vol. 50, pp. 3545-3550, 1990
Ohta, N. "Estmating Absorption Bands of Component Dyes by Means of Principal Component Analysis," Analytical Chem., vol. 45, pp. 553-557, 1973
Perez, F. and C.Koch, "Toward Color Image Sementation in Analog VLSI: Algorithm and Hardware," Int. J. Comp. Vision, vol. 12, pp. 17-42, 1994
Sasaki, K., S. Kawata and S. Minami, "Estimation of Component Spectral Curves from Unknown Mixture Spectra," Appl. Optics, vol. 23, pp. 1955-1959, 1984
Sasaki, K., S. Kawata and S. Minami, "Component Analysis of Spatial and Spectral Patterns in Multispectral Images. II. Entropy Minimization," J. Opt. Soc. Am. A., vol. 6, No. 1, pp. 73-79, 1989
Sasaki, K., S. Kawata and S. Minami, "Constrained Nonlinear Method for Estimating Component Spectra from Multicomponent Mixtures," Appl. Optics, vol. 22, pp. 3599-3603, 1983
Schwartz, B.R., G. Pinkus, S. Bacus, M. Toder and D.S. Weinberg, "Cell Proliferation in Non-Hodgkin's Lymphomas," Am. J. Pathol., vol. 134, pp. 327-336, 1989
Umbaugh, S.E. R.H. Moss, and W.V. Stoecker, "Automatic Color Segmentation of Images with Application to Detection of Variegated Coloring in Skin Tumors," IEEE Engr. Med. Biol. Magazine, Dec. 1989, pp. 43-52
Yamamoto, S. and H. Yokouchi, "Automotive Recognition of Color Fundus Photographs," in Digital Processing of Biomedical Images, 1976
Zhou, R., E.H. Hammond, W.T. Sause, P. Rubin, B. Emami, M.V. Pilepich, S.D. Asbell and D.L. Parker, "Quantitation of Prostate-Specific Acid Phosphate in Prostate Cancer: Reproducibility and Correlation with Subjective Grade," Modern Pathology, vol. 7, No. 4, pp. 440-448, 1994
Zhou, R., D.L. Parker and E.H. Hammond, "Quantitative Peroxidase-Complex-Substrate Mass Determination in Tissue Sections by a Dual Wavelength Method," Analyt. Quant. Cytol. Histol., Vo. 14, No. 2, pp. 73-80, 1992
R. Zhou, "Quantitive Evaluation of the Peroxidase-Antiperoxidase-Diaminobenzidine Stain in Double Stained Prostatic Tumor Slides by Dual Wavelength Technique," Master's Thesis, Department of Medical Informatics, University of Utah, Mar. 199