U.S. patents available from 1976 to present.
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Knowledge-based molecular retrieval system and method using a hierarchy of molecular structures in the knowledge base

Patent 5418944 Issued on May 23, 1995. Estimated Expiration Date: Icon_subject May 23, 2012. Estimated Expiration Date is calculated based on simple USPTO term provisions. It does not account for terminal disclaimers, term adjustments, failure to pay maintenance fees, or other factors which might affect the term of a patent.

Patent References

Storage and retrieval of generic chemical structure representations
Patent #: 4642762
Issued on: 02/10/1987
Inventor: Fisanick

Method and apparatus for determining the chemical structure of an unknown substance
Patent #: 4719582
Issued on: 01/12/1988
Inventor: Ishida ,   et al.

Method of storing and searching chemical structure data Patent #: 4811217
Issued on: 03/07/1989
Inventor: Tokizane ,   et al.

Inventors

Application

No. 824629 filed on 01/23/1992

US Classes:

707/3, Query processing (i.e., searching)702/27, Molecular structure or composition determination707/104.1Application of database or data structure (e.g., distributed, multimedia, image)

Examiners

Primary: Black, Thomas G.
Assistant: Loomis, John C.

Attorney, Agent or Firm

International Class

G06F 015/40

Abstract

A molecular retrieval system and method answering to similarity queries for retrieving molecular structures, stored into a source database (22) and having a required similarity with an input structure, which can contain a set of property regions. A target database (23) stores the molecular structures described in hierarchical way and a knowledge base (24) stores well-known molecular fragments at different levels of description together with a set of physical and chemical properties associated to each fragment. A fragment recognizer (21) analyzes the fragments of the input structure to represent them in a hierarchical way. A query analyzer (25) analyzes the similarity queries and selects the appropriate level of molecular representation on the basis of the required similarity. Matching means (26, 27, 29), when called by the query analyzer (25), perform a matching of the representation of the input structure against the representations of the molecular structures stored into the target database (23) at the selected level of molecular representation.

Other References

  • Brugge et al., "Evolution of a Knowledge-Based System for Determining Structural Components of Proteins", Expert Systems, Aug. 1989, pp. 144-156
  • Lathrop et al., "Ariadne: Pattern-Directed Inference and Hierarchical Abstraction in Protein Structure Recognition"; Communications of the ACM, Nov. 1987, pp. 909-921
  • Lathrop et al., "Ariadne: Pattern-Directed Inference and Hierarchical Abstraction in Protein Structure Recognition", Communications of the ACM, vol. 30, No. 11, Nov. 1987
  • Brugge et al., "Evolution of a Knowledge-Based System for Determining Structural Components of Proteins", Expert Systems, vol. 6, No. 3, Aug. 1989
  • Pogue et al., "Searching and Clustering of Databases Using the ICL Distributed Array Processor", Parallel Computing, vol. 8, No. 1-3, Oct. 1988
  • Ferrin et al., "The MIDAS Database System", J. Mol. Graphics, vol. 6, No. 1, Mar. 198
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