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Amplification of midivariant DNA templates

Patent 5407798 Issued on April 18, 1995. Estimated Expiration Date: Icon_subject February 5, 2013. Estimated Expiration Date is calculated based on simple USPTO term provisions. It does not account for terminal disclaimers, term adjustments, failure to pay maintenance fees, or other factors which might affect the term of a patent.

Patent References

Autocatalytic replication of recombinant RNA
Patent #: 4786600
Issued on: 11/22/1988
Inventor: Kramer ,   et al.

Detection of specific sequences in nucleic acids
Patent #: 4883750
Issued on: 11/28/1989
Inventor: Whiteley, et al.

Target-dependent synthesis of an artificial gene for the synthesis of a replicatable RNA Patent #: 5112734
Issued on: 05/12/1992
Inventor: Kramer, et al.

Inventors

Assignee

Application

No. 015249 filed on 02/05/1993

US Classes:

435/6, Involving nucleic acid435/91.1Polynucleotide (e.g., nucleic acid, oligonucleotide, etc.)

Examiners

Primary: Zitomer, Stephanie W.

Attorney, Agent or Firm

Foreign Patent References

  • 9006376 WO. 06/13/1990
  • 9014439 WO. 11/13/1990

International Classes

C12Q 001/68
C12P 019/34

Abstract

New methods are provided for the amplification of a midivariant DNA containing an inserted target specific nucleic acid sequence(s) to enable detection of the presence of a target nucleic acid sequence in a test sample. One method employs midivariant DNA as a template for the synthesis of RNA catalyzed by QB replicase. Two midivariant DNA/probe conjugates including a nonreplicable portion of midivariant DNA and a target specific nucleic acid sequence (probe) are described. An amplification method including the steps of hybridization and ligation of the midivariant DNA/probe conjugates followed by replication of the DNA template has enabled detection of less than 200 template molecules. In a modified amplification method one of the midivariant DNA/probe conjugates further includes a RNA polymerase promoter sequence to enable transcription of the midivariant DNA template into RNA. The sequential ligation-transcription-replication method enables the detection of a single template molecule. The detectable molecule(s) are indicative of the presence of the target nucleic acid sequences in the test sample.

Other References

  • Lizardi et al., Bio/Technology 6(10):1197-1202 (Oct. 1988)
  • WO-A-9002820 entitled "Replicative RNA-based amplification/detection systems"
  • EP-A-0361983 entitled "Nucleic acid amplification using a single primer"
  • WO-A-9003446 entitled "Nucleic acid probes containing improved molecular switch, and assays and kits incorporating same"
  • EP-A-0379369 entitled "RNA template end-linked probe constructs and methods of use"
  • Feix et al., FEBS Lett. 63(1):201-204 (Mar. 1976)
  • Zhang, Diss. Abstr. Intl. 53/11-B:5568 (1992) (Ph.D. thesis/abstr.)
  • Cahill, et al., Clin. Chem. 37(9), 1482-1485 (1991), "Polymerase Chain Reaction and QB Replicase Amplification"
  • Kramer, et al., Nature, 339, 401-402 (Jun. 1, 1989), "Replicable RNA Reporters"
  • Kramer et al., Trends in Biotechnology 9, 53-58 (Feb. 1991), "Exponential Amplification of Nucleic Acids: New Diagnostics Using DNA. Polymerases and RNA Replicases
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