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Class 536/25.3 - Synthesis of polynucleotides or oligonucleotides


Subclass of Class 536 - Organic compounds -- part of the class 532-570 series
Definition: Process for the synthesis of polynucleotides or oligonucleotides,
No. of patents: 1628
Last issue date: 05/01/2012


1                      
NumberTitleIssue Date
8168776Method for making a 21 nucleotide double stranded RNA chemically linked at one end
The present invention provides methods and compositions for inhibiting gene expression using double stranded RNA molecules that are between 15 and 21 nucleotides in length and are complementary to a target gene sequence. ...
05/01/2012
8168777Bisulphite reagent treatment of nucleic acid
Methods for treating nucleic acid including: (a) providing an alkali environment to a nucleic acid sample; (b) reacting the nucleic acid sample with a bisulphite reagent and incubating the reaction so as to form a treated nucleic acid sample where methylated nucleot...
05/01/2012
81638975-bromo-2′-deoxy-uridine labeled nucleotide triphosphates and nucleic acid probes and methods of making and using the same
5-bromo-2′-deoxy-uridine (BrdU) labeled nucleotide triphosphates and nucleic acid probes are described herein. The BrdU labeled nucleotide triphosphates include a linker between the nucleotide triphosphate and the BrdU moiety. The linker can be cleavable or non-cl...
04/24/2012
8158774Method for introducing a nucleic-acid protecting group
The present invention relates to a simple, economical method for introducing substituent (I) at the 2′-hydroxyl group of the ribose of a ribonucleic acid derivative whose 3′-hydroxyl group and 5′-hydroxyl group are protected with a silicon protecting group, wh...
04/17/2012
8129517Labeled solid supports for organic synthesis
The disclosed invention pertains to improved oligonucleotide manufacturing methods, including novel support compositions that are optionally labeled, their methods of preparation and use. The compositions and methods are particularly well suited for high throughput ...
03/06/2012
8093371Method of producing a nucleic acid
The present invention provides a method of producing a nucleic acid at high reaction efficiency and high reproducibility with a decreased variation in yield and purity among different reaction lots. A nucleic acid synthesis reaction is carried out on a first solid p...
01/10/2012
8071755Nucleotide analogs
The invention provides for nucleotide analogs and methods of using the same, e.g., for sequencing nucleic acids. ...
12/06/2011
8067578Substrate preparation process
The present invention provides novel processes for the large scale preparation of arrays of polymer sequences wherein each array includes a plurality of different, positionally distinct polymer sequences having known monomer sequences. The methods of the invention c...
11/29/2011
80396112′-hydroxyl group-modified ribonucleoside derivatives
Provided is a ribonucleoside derivative represented by General Formula (I): (wherein R1 represents a hydrogen atom or the like, R2 represents a hydrogen atom or the like, R3 represents a met...
10/18/2011
8030477Methods for the synthesis of arrays of DNA probes
The synthesis of arrays of DNA probes sequences, polypeptides, and the like is carried out using a patterning process on an active surface of a substrate. An image is projected onto the active surface of the substrate utilizing reflective projection optics. The proj...
10/04/2011
8030478Method for nucleic acid replication and novel artificial base pairs
The present invention relates to a method for nucleic acid replication and novel artificial base pairs. The method of the present invention for nucleic acid replication is characterized in that a deoxyribonucleoside 5′-triphosphate, in which the hydroxyl gr...
10/04/2011
7999098Triphosphate oligonucleotide modification reagents and uses thereof
Hydrazino, oxyamino and carbonyl-based monomers and methods for incorporation into oligonucleotides during enzymatic synthesis are provided. Modified oligonucleotides are provided that incorporate the monomers provided herein. Immobilized oligonucleotides and oligon...
08/16/2011
7982029Synthesis of four color 3′O-allyl, modified photocleavable fluorescent nucleotides and related methods
This invention provides a process for making 3′-O-allyl-dGTP-PC-Biodopy-FL-510, 3′-O-allyl-dATP-PC-ROX, 3′-O-allyl-dCTP-PC-Bodipy-650 and 3′-O-allyl-dUTP-PC-R6G, and related methods. ...
07/19/2011
7968701Nylon polyribonucleosides
The present invention provides a polyribonucleoside ladder copolymer molecule of general formula (I) ...
06/28/2011
7956011Materials and methods for the photodirected synthesis of oligonucleotide arrays
Materials and methods for photodirected synthesis of oligonucleotide arrays on a solid substrate by photodirected synthesis are disclosed which employ a film formed from (i) a photoacid generator that on photolysis generates acid that is capable of directly removing...
06/07/2011
7923550Reagent compounds and methods of making and using the same
The present invention describes novel compounds and methods for capping reactive groups on support and during multistep synthesis. These new capping reagents are also useful for high quality synthesis on solid supports and surfaces used as microarrays, biosensors, o...
04/12/2011
7897758Activators for oligonucleotide and phosphoramidite synthesis
The present invention discloses novel methods for the synthesis of oligonucleotides and nucleoside phosphoramidites. The methods are based on employing aryl-substituted 5-phenyl-1H-tetrazoles with perfluoroalkyl groups on the aromatic ring as activators. In one aspe...
03/01/2011
7872120Methods for synthesizing a collection of partially identical polynucleotides
Methods for synthesizing a collection of partially identical polynucleotides are disclosed. ...
01/18/2011
7868161Photocrosslinking probes and uses of the same
A method of detecting a target nucleic acid is disclosed, the method comprising detecting the presence of a fluorescent covalent crosslinked product from non-fluorescent precursors. The fluorescent covalent crosslinked product comprises a novel fluorophore structure...
01/11/2011
7855285Methods for selective N-9 glycosylation of purines
A process for providing regiospecific and highly stereoselective synthesis of 9-β anomeric purine nucleoside analogs is described. The introduction of the sugar moiety on to 6-(azolyl)-substituted purine bases is performed so that highly stereoselective formation o...
12/21/2010
7833942Methods for simplifying microbial nucleic acids by chemical modification of cytosines
A method for simplification of a microbial genome or microbial nucleic acid comprising treating microbial genome or nucleic acid with an agent that modifies cytosine to form derivative microbial nucleic acid and amplifying the derivative microbial nucleic acid to pr...
11/16/2010
7820810Process for the synthesis of 2′-O-substituted purine nulceosides
The present invention provides an improved process for the synthesis of 2′-O-substituted purine nucleosides. The process includes anhydro or thioanhydro ring opening of a selected 8,2′-cyclopurine nucleoside with a weak nucleophile in the presence of a Lewis aci...
10/26/2010
7795423Polynucleotide labeling reagent
The present invention provides a new labeling reagent for preparing modified oligonucleotides and processes for their production wherein these oligonucleotides contain at least once the structure P═N—SO2-benzole-L-M-X, characterized in that L is eithe...
09/14/2010
7786293Organic compounds
The present invention provides a process for the sulfurization of phosphorus-containing compounds. More particularly, the process involves contacting the compound to be sulfurized with a sulfur transfer reagent as defined hereinbefore in a solvent or a mixture of so...
08/31/2010
7786294Compositions and methods for amplification and cloning of near full-length viral genome samples
A method of producing a polydeoxyribonucleotide molecule by reverse transcriptase polymerase chain reaction wherein the polydeoxyribonucleotide molecule has a length of greater than 5,000 base-pairs is disclosed. The method involves combining two reverse transcripta...
08/31/2010
7777023Method for the chemical synthesis of oligonucleotides
The present invention features novel compositions, linkers, derivatized solid supports, and methods for the efficient solid phase synthesis of oligonucleotides, including RNA, DNA, RNA-DNA chimeras, and analogs thereof. ...
08/17/2010
7772390Lipid mediated nucleic acid synthesis
Methods and compositions for synthesizing polymers, such as nucleic acids, are provided. Aspects of the invention include methods in which lipids and monomeric precursors, e.g., mononucleotides, of the desired polymeric products are combined to produce a reaction mi...
08/10/2010
7759480Chloral-free DCA in oligonucleotide synthesis
A process of manufacturing oligonucleotides includes a 5′-deblocking step in which the 5-blocking group is removed with dichloroacetic acid that is essentially free of chloral. The process is useful for making oligonucleotides that are substantially free of chlora...
07/20/2010
7750144Methods and compositions for enhancing the efficacy and specificity of RNA silencing
The present invention provides methods of enhancing the efficacy and specificity of RNA silencing. The invention also provides compositions for mediating RNA silencing. In particular, the invention provides siRNAs, siRNA-like molecules, shRNAs, vectors and transgene...
07/06/2010
7741472Polynucleotide containing a phosphate mimetic
The present invention concerns modified oligonucleotides and processes for their production wherein these oligonucleotides contain at least once the structure P═N-Acc where Acc is an electron acceptor or an electron acceptor substituted with a residue R and R is a...
06/22/2010
7741471Reagents for the improved synthesis of isoguanosine containing oligonucleotides
The present invention provides the combination of the O-2 diphenylcarbamoyl (“DPC”) and N-6 dimethylaminomethylidene (“DMF”) protecting groups for isoguanosine nucleosides that can be utilized in oligonucleotide synthesis. ...
06/22/2010
7723511Synthesis of sulfurized oligonucleotides
Methods for the formation of sulfurized oligonucleotides are provided. The methods allow for the formation of phosphorothioate linkages in the oligonucleotides or derivatives, without the need for complex solvent mixtures and repeated washing or solvent changes. Oli...
05/25/2010
7687618Method of manufacturing labelled oligonucleotide conjugates
The present invention relates to a method for the manufacture of labeled oligonucleotide conjugates comprising the reaction of (a) an oligonucleotide having a labile protecting group bound to a terminal hydroxy group, and (b) a labeling compound, wherein said labile...
03/30/2010
7671191Methods for preparing 2-alkynyladenosine derivatives
Disclosed are methods for preparing 2-alkynyladenosine derivatives of formula A: or a stereoisomer, pharmaceutically acceptable salt, hydrate, solvate, acid salt hydrate or isomorphic crystalline fo...
03/02/2010
7667032Method of manufacturing a microarray
A method of manufacturing a microarray includes providing a substrate having a surface that is immobilized with a functional group protected with an acid-labile protecting group and capable of coupling with an oligomer probe, providing a photoacid generator onto the...
02/23/2010
7667031Nucleic acid base pair
A novel artificial nucleic acid base pair which is obtained by forming a selective base pair by introducing a group having steric hindrance (preferably a group having steric hindrance and static repulsion and a stacking effect) and can be recognized by a polymerase ...
02/23/2010
7667033Compositions and methods for the use of FMOC derivatives in DNA/RNA synthesis
Methods of nucleic acid preparation are described, including preparation of MnRNA, using FMOC derivatives to synthesize oligonucleotides in addition to applying FMOC protocols to various therapeutic and diagnostic methods. In some embodiments a single stranded oligo...
02/23/2010
7659391Method for the in vitro synthesis of short double stranded RNAs
The present invention relates to the field of synthesis of short double-stranded RNAs. An in vitro transcription method using bacteriophage polymerases and target sequence-specific single-stranded DNA oligonucleotides as templates is disclosed. The present invention...
02/09/2010
7632940Process for the preparation of 4′-azido cytidine derivatives
The invention relates to a novel process for the preparation of 4′-azido-cytidine (I) or a pharmaceutically accepted salt thereof. The compound of formula I is useful for treating virus mediated diseases, particularly for...
12/15/2009
7629457Method for producing cytosine nucleoside compounds
The invention provides a method for producing a cytosine nucleoside compound from pentose-1-phosphate and cytosine or a derivative thereof using a nucleoside phosphorylase reactive to cytosine or a bacterium having the enzyme activity. The invention also provides a ...
12/08/2009
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