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Class 435/91.5 - Acellular preparation of polynucleotide


Subclass of Class 435 - Chemistry: molecular biology and microbiology
Definition: Processes wherein the polynucleotide is prepared enzymatically
No. of patents: 428
Last issue date: 10/04/2011


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NumberTitleIssue Date
8030034Nucleic acid purification with a binding matrix
The present invention relates to methods, kits, and compositions for generating purified RNA samples and purified DNA samples. In particular, the present invention provides methods for generating a purified RNA or DNA sample from a sample containing both DNA and RNA...
10/04/2011
7465562Nucleic acid processing methods, kits and devices
Biological samples containing nucleic acids, RNA and DNA, are freed from bound proteins by incubation with a chaotropic agent such as a guanidium salt, and the mixture is readied for further processing by dilution of such agent to a concentration below 0.05 M withou...
12/16/2008
7435562Modular vector systems
The present invention provides improved techniques and reagents for producing nucleic acid molecules. In certain preferred embodiments, the nucleic acid molecules are modular vectors. In certain preferred embodiments, the nucleic acid molecules are produced in polym...
10/14/2008
7402388Expression analysis of FKBP54 in assessing prostate cancer therapy
The invention relates to compositions, kits, and methods for detecting, characterizing, preventing, and treating prostate cancer. FKBP markers are provided, wherein changes in the levels of expression of one or more of the FKBP markers is correlated with the presenc...
07/22/2008
7402411Species-specific probes for identification of target virus and identification method using said probes
The inventions provides a method for identifying a target virus in an infected subject comprising the steps of designing a pair of degenerate primers corresponding to highly conserved regions of the target virus; designing a pair of species-specific primers accordin...
07/22/2008
7393666Use of hepatitis B X-interacting protein (HBXIP) in modulation of apoptosis
Novel methods of regulating cellular apoptosis by affecting the interaction of hepatitis B X-interacting protein (HBXIP) with Survivin are described. More specifically, these novel methods of enhancing apoptosis of neoplastic cells comprises inhibiting interaction o...
07/01/2008
7371723Therapeutic agents comprising pro-apoptotic proteins
The present invention relates to targeted killing of a cell utilizing a chimeric polypeptide comprising a cell-specific targeting moiety and a signal transduction pathway factor. In a preferred embodiment, the signal transduction pathway factor is an apoptosis-induc...
05/13/2008
7371519Methods and kits for indirect labeling of nucleic acids
Methods and kits for labeling nucleic acids are provided. In the subject methods, an oligonucleotide tagged nucleic acid comprising an oligonucleotide tag is first generated. The oligonucleotide tagged nucleic acid is then contacted under hybridization conditions wi...
05/13/2008
7329515Solid support for the synthesis of 3′-amino oligonucleotides
The present invention discloses novel methods and solid supports for the synthesis of 3′-amino oligonucleotides. The novel supports are based on an unsubstituted or ring-substituted hydroxymethylbenzoyl linker element wherein the hydroxymethyl group is esterified ...
02/12/2008
7323320Microarray synthesis and assembly of gene-length polynucleotides
There is disclosed a process for in vitro synthesis and assembly of long, gene-length polynucleotides based upon assembly of multiple shorter oligonucleotides synthesized in situ on a microarray platform. Specifically, there is disclosed a process for in situ synthe...
01/29/2008
7323319RNA containing coenzymes, biotin, or fluorophores, and methods for their preparation and use
Materials and methods for incorporating adenosine derivatives into the 5′ end of transcribed RNA are disclosed. Adenosine derivatives include naturally occurring compounds such as Coenzyme A, NAD, and FAD, as well as various non-naturally occurring compounds. The ...
01/29/2008
7321828System of components for preparing oligonucleotides
Interative, preferably computer based iterative processes for generating synthetic compounds with desired physical, chemical and/or bioactive properties, i.e., active compounds, are provided. During iterations of the processes, a target nucleic acid sequence is prov...
01/22/2008
7319001High throughput system for producing recombinant viruses using site-specific recombination
Disclosed are the methods for producing recombinant viruses using site-specific recombination in vitro. In the present invention, circular viral genomic DNAs are digested with restriction enzymes to generate a linear form viral genomic DNAs flanked by site-specific ...
01/15/2008
7316900Methylated nucleotide regulation of gene expression
The present invention provides a method of regulating the expression of the urokinase type plasminogen activator (“uPA”) gene in a mammalian cell comprising the steps of: identifying a target nucleotide sequence in a gene of interest, obtaining a methylated anti...
01/08/2008
7309589Sensitive detection of bacteria by improved nested polymerase chain reaction targeting the 16S ribosomal RNA gene and identification of bacterial species by amplicon sequencing
A method for identifying an RNA form of a bacteria, comprising reverse transcribing RNA material; conducting PCR using primers for a first highly conserved genetic sequence generic of the bacteria; conducting nested PCR using primers for a second highly conserved ge...
12/18/2007
7291487Methods for using mutant RNA polymerases with reduced discrimination between non-canonical and canonical nucleoside triphosphates
A method for synthesizing a nucleic acid molecule comprising at least one non-canonical nucleoside triphosphate using a mutant polymerase having a reduced discrimination between canonical and non-canonical substrates is disclosed. The method comprises incubating a t...
11/06/2007
7285635Modified proteins, designer toxins, and methods of making thereof
The present invention concerns methods of reducing the antigenicity of a proteinaceous compound while maintaining the compounds biological activity, as well as proteinaceous compositions with biological activity but reduced antigenicity. These methods and compositio...
10/23/2007
7282326Recombinational cloning using engineered recombination sites
Recombinational cloning is provided by the use of nucleic acids, vectors and methods, in vitro and in vivo, for moving or exchanging segments of DNA molecules using engineered recombination sites and recombination proteins to provide chimeric DNA molecules that have...
10/16/2007
7270980Compounds for immunodiagnosis of prostate cancer and methods for their use
Compounds and methods for diagnosing prostate cancer are provided. The inventive compounds include polypeptides containing at least a portion of a prostate tumor protein. The inventive polypeptides may be used to generate antibodies useful for the diagnosis and moni...
09/18/2007
7262032Allele-specific mutation detection assay using an enzyme-disabling agent
The present invention relates to a method of detecting a base at a pre-determined position in a nucleic acid molecule by performing enzymatic detection reactions using base-specific detection oligomers, where each oligomer is specific for a particular base at the pr...
08/28/2007
7247434Methods and compositions for determining the sequence of nucleic acid molecules
Methods and compounds, including compositions therefrom, are provided for determining the sequence of nucleic acid molecules. The methods permit the determination of multiple nucleic acid sequences simultaneously. The compounds are used as tags to generate tagged nu...
07/24/2007
7229974G cap-stabilized oligonucleotides
Oligonucleotides of the formula 5′-(CAP)-(Oligo)-(CAP)-3′ are disclosed where (oligo) is a nucleotide sequence of from 10 to 40 nucleotides in length, and CAP is Gm, where m is an integer of from zero to ten, the two CAP's which ar...
06/12/2007
7223569Promoter and construct for plant transformation
The present invention is directed to a promoter, designated MuA. The present invention is also directed to DNA molecules including said promoter, such as a DNA construct comprising the promoter operably linked to one or more genes or antisense DNA. The invention is ...
05/29/2007
7208295Multiplex oligonucleotide addition and target amplification
Methods for appending oligonucleotides directly to nucleic acid templates, particularly to defined sites internal to single-stranded templates, are described. Appending first and second common priming sites to each of a plurality of templates of distinct sequence al...
04/24/2007
7202028Methods for the electrochemical detection of multiple target compounds
A method of detecting two different target molecules through a single electrode is carried out by (a) providing a conductive oxidation-reduction reaction detection electrode; (b) contacting a sample suspected of containing a first and second target molecule to the e...
04/10/2007
7198924Methods and compositions for synthesis of nucleic acid molecules using multiple recognition sites
The present invention provides compositions and methods for recombinational cloning. The compositions include vectors having multiple recombination sites and/or multiple topoisomerase recognition sites. The methods permit the simultaneous cloning of two or more diff...
04/03/2007
7186525Methods of RNA and protein synthesis
The present invention relates to methods for RNA and/or protein synthesis using in vitro or in vivo expression systems. More specifically, the present invention provides a method for RNA and/or protein synthesis characterized in that the concentration of alpha subun...
03/06/2007
7179905Nucleic acid labeling compounds
Nucleic acid labeling compounds containing heterocyclic derivatives are disclosed. The heterocyclic derivative containing compounds are synthesized by condensing a heterocyclic derivative with a cyclic group (e.g. a ribofuranose derivative). The labeling compounds a...
02/20/2007
7175985Method of detecting variation or polymorphism
The method of the present invention is based on a method wherein a nucleic acid is synthesized utilizing the hybridized 3′-end, which is synthesized by complementary strand synthesis, on a specific region of a target nucleotide sequence existing as the nucleotide ...
02/13/2007
7163789Cancer diagnosis method
The invention concerns a method for the diagnosis and/or the follow up of the evolution of cancer comprising the analysis of the RNA components of the telomerase enzyme present in the plasma or serum of the blood. ...
01/16/2007
7153672Method of performing reverse transcription reaction using reverse transcriptase encoded by non-LTR retrotransposable element
The present invention relates to a method of preparing a cDNA molecule which includes: contacting an RNA molecule, in the presence of dNTPs, with a non-LTR retrotransposon protein or polypeptide having reverse transcriptase activity under conditions effective for pr...
12/26/2006
7141398Methods for recycling mRNA for linear cRNA amplification
In one aspect, the present invention provides methods for synthesizing multiple copies of antisense cDNA molecules from an RNA molecule, comprising using an RNA molecule as a template for synthesizing multiple copies of antisense cDNA molecules. In some embodiments ...
11/28/2006
7132239Determination of a genotype of an amplification product at multiple allelic sites
A method is provided for genotyping a target sequence at at least two allelic sites by a 5′ nuclease amplification reaction. In one embodiment, the method includes performing a nucleic acid amplification on a target sequence having at least two different allelic s...
11/07/2006
7129045Methods of detecting polynucleotide kinase and its use as a label
Methods of detecting or measuring the activity of polynucleotide kinase are disclosed as well as methods of detecting an analyte in an assay using polynucleotide kinase as a label on a member of a specific binding pair. The methods rely on the phosphorylation of an ...
10/31/2006
7101977Therapeutic agents comprising pro-apoptotic proteins
The present invention relates to targeted killing of a cell utilizing a chimeric polypeptide comprising a cell-specific targeting moiety and a signal transduction pathway factor. In a preferred embodiment, the signal transduction pathway factor is an apoptosis-induc...
09/05/2006
7094538Diagnostic assay for cancer susceptibility
The lifetime probability of a person developing cancer can now be determined based on an allelic variation found in the 3′UTR of the prohibitin gene. The probability is dependent on the sequence of the 3′UTR at position 729, i.e., whether there is a thymine (T) ...
08/22/2006
7090975Pyrophosphorolysis and incorporation of nucleotide method for nucleic acid detection
Processes are disclosed using the depolymerization of a nucleic acid hybrid and incorporation of a suitable nucleotide to qualitatively and quantitatively analyze for the presence of predetermined nucleic acid target sequences. Applications of those processes includ...
08/15/2006
7090979Derivatized versions of ligase enzymes for constructing DNA sequences
A method of making very long, double-stranded synthetic poly-nucleotides. A multiplicity of short oligonucleotides is provided. The short oligonucleotides are sequentially hybridized to each other. Enzymatic ligation of the oligonucleotides provides a contiguous pie...
08/15/2006
7083957Modified proteins, designer toxins, and methods of making thereof
The present invention concerns methods of reducing the antigenicity of a proteinaceous compound while maintaining the compounds biological activity, as well as proteinaceous compositions with biological activity but reduced antigenicity. These methods and compositio...
08/01/2006
7078171Methods for identifying novel nucleic acid regulatory elements and compounds that affect the regulation
Described herein are methods for identifying novel nucleic acid regulatory elements and compounds that modulate the regulation of such elements. Also described herein are nucleic acid sequence identified as novel nucleic acid regulatory elements and host cells conta...
07/18/2006
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